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k3s-cluster
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feat: start switching to new cloudnative-pg, remove label selectors for prometheus stack resources

This commit is contained in:
SeanOMik 2024-10-16 19:48:40 -04:00
parent 8930139280
commit 95f9682843
Signed by: SeanOMik
GPG Key ID: FEC9E2FC15235964
17 changed files with 365 additions and 217 deletions
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2
kubernetes/main/apps/database/kustomization.yaml
View File

@ -3,7 +3,7 @@ kind: Kustomization
resources:
- ./namespace.yaml
#- ./network_policy.yaml
- ./postgresql
- ./postgresql/ks.yaml
- ./redis
- ./minio
- ./mysql

37
kubernetes/main/apps/database/postgresql/app/helm-release.yaml Normal file
View File

@ -0,0 +1,37 @@
---
# yaml-language-server: $schema=https://kubernetes-schemas.pages.dev/helm.toolkit.fluxcd.io/helmrelease_v2.json
apiVersion: helm.toolkit.fluxcd.io/v2
kind: HelmRelease
metadata:
name: cloudnative-pg
namespace: database
spec:
interval: 30m
chart:
spec:
chart: cloudnative-pg
version: 0.22.0
sourceRef:
kind: HelmRepository
name: cloudnative-pg
namespace: flux-system
install:
remediation:
retries: 3
upgrade:
cleanupOnFail: true
remediation:
strategy: rollback
retries: 3
dependsOn:
- name: minio
namespace: database
- name: openebs
namespace: openebs-system
values:
crds:
create: true
monitoring:
podMonitorEnabled: false
grafanaDashboard:
create: true

6
kubernetes/main/apps/database/postgresql/pgadmin4/helm-repository.yaml → kubernetes/main/apps/database/postgresql/app/helm-repository.yaml
View File

@ -1,8 +1,8 @@
apiVersion: source.toolkit.fluxcd.io/v1
kind: HelmRepository
metadata:
name: runix-charts
name: cloudnative-pg
namespace: flux-system
spec:
interval: 1m
url: https://helm.runix.net
interval: 2h
url: https://cloudnative-pg.io/charts

2
kubernetes/main/apps/database/postgresql/pgadmin4/kustomization.yaml → kubernetes/main/apps/database/postgresql/app/kustomization.yaml
View File

@ -1,6 +1,6 @@
apiVersion: kustomize.config.k8s.io/v1beta1
kind: Kustomization
resources:
- ./pgadmin4.sops.yaml
- ./secret.sops.yaml
- ./helm-repository.yaml
- ./helm-release.yaml

76
kubernetes/main/apps/database/postgresql/app/secret.sops.yaml Normal file
View File

@ -0,0 +1,76 @@
apiVersion: v1
kind: Secret
metadata:
name: cloudnative-pg-secret
namespace: database
labels:
cnpg.io/reload: "true"
stringData:
username: ENC[AES256_GCM,data:SZUXJOMnDmI=,iv:huI5AHvtfU6aCo6drbdZxJ2QwOGwKAd4CfSi8WWUQHU=,tag:fIETu/Yyx01raNTnmBt8AA==,type:str]
password: ENC[AES256_GCM,data:qlcpDS3RhNtSowFuMYlpL11WdR4tZK9M3eZug9TerA4=,iv:9d7ChBA4VcFRszCm3rfPJSYESK2it/dryK0TetDM2Ns=,tag:Z7EI76aBEltrUym/T8MuiA==,type:str]
minioAccessKey: ENC[AES256_GCM,data:CsmN8wuSLLOtiA0PWeaWuw==,iv:oRNB1nhRPH7fRf98exEZ7lGSpvqVRx4l+tQyjPU2rog=,tag:Gx9SRd2UnHNgBiVtalrHAA==,type:str]
minioSecretKey: ENC[AES256_GCM,data:gW5lUoSY2oTLhczB0CySIOadmrltk+zMpYJ6XPRQmtI=,iv:NfnjIwfILvCS99tUdHbCvJwztNPpT8ne4oAg4yOjgFM=,tag:kC6EKVPCGbQxwKySjkgYhw==,type:str]
sops:
kms: []
gcp_kms: []
azure_kv: []
hc_vault: []
age: []
lastmodified: "2024-10-16T23:46:50Z"
mac: ENC[AES256_GCM,data:1j9tp3Z30k3LC40djCriXYr78LLmSAUkssqBJgk/RKDt6eHbBPwtUhzmLewF8dSxo2shLl/jzKPCsL8HP+kHSvL9bCtrgDBnIEJabGISAHDTDBXkLB+uzVlfx0diDbX0fpZZNBSPCzFHYiebGqY1scUVsN1sBOPxUNrbIi9iKro=,iv:rYsu3+KPmuXBAp/ciYmojj3LEBL8F6PjwXQ1pmJVm5c=,tag:d3r+p29s4POVhCKeAal1cg==,type:str]
pgp:
- created_at: "2024-10-16T23:46:50Z"
enc: |-
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=xH0Y
-----END PGP MESSAGE-----
fp: BD1AAF9D8170F4BEE437365FF6F0933799CFEBCD
- created_at: "2024-10-16T23:46:50Z"
enc: |-
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fp: 687802D4DFD8AA82EA55666CF7DADAC782D7663D
encrypted_regex: ^(data|stringData)$
version: 3.9.1

17
kubernetes/main/apps/database/postgresql/cert.yaml
View File

@ -1,17 +0,0 @@
apiVersion: cert-manager.io/v1
kind: Certificate
metadata:
name: postgres-cert
namespace: database
spec:
secretName: postgres-cert
duration: 2160h # 90d
renewBefore: 360h # 15d
issuerRef:
name: ca-issuer
kind: ClusterIssuer
dnsNames:
- postgresql.database

83
kubernetes/main/apps/database/postgresql/cluster/cluster16.yaml Normal file
View File

@ -0,0 +1,83 @@
---
# yaml-language-server: $schema=https://kubernetes-schemas.pages.dev/postgresql.cnpg.io/cluster_v1.json
apiVersion: postgresql.cnpg.io/v1
kind: Cluster
metadata:
name: postgres16
namespace: database
spec:
instances: 3
imageName: ghcr.io/cloudnative-pg/postgresql:16.4-28
primaryUpdateStrategy: unsupervised
storage:
size: 20Gi
storageClass: openebs-zfs-mainpool
superuserSecret:
name: cloudnative-pg-secret
enableSuperuserAccess: true
postgresql:
parameters:
max_connections: "400"
shared_buffers: 256MB
nodeMaintenanceWindow:
inProgress: false
reusePVC: true
resources:
requests:
cpu: 500m
limits:
memory: 4Gi
monitoring:
enablePodMonitor: true
backup:
retentionPolicy: 30d
barmanObjectStore: &barmanObjectStore
data:
compression: bzip2
wal:
compression: bzip2
maxParallel: 8
destinationPath: s3://cloudnative-pg/
endpointURL: http://minio.database.svc:9000
# Note: serverName version needs to be inclemented
# when recovering from an existing cnpg cluster
serverName: &currentCluster postgres16-v2
s3Credentials:
accessKeyId:
name: cloudnative-pg-secret
key: minioAccessKey
secretAccessKey:
name: cloudnative-pg-secret
key: minioSecretKey
# Note: previousCluster needs to be set to the name of the previous
# cluster when recovering from an existing cnpg cluster
bootstrap:
recovery:
source: &previousCluster postgres16-v1
# initdb:
# import:
# type: monolith
# databases:
# - "*"
# roles:
# - "*"
# source:
# externalCluster: old-cluster
# Note: externalClusters is needed when recovering from an existing cnpg cluster
externalClusters:
- name: *previousCluster
barmanObjectStore:
<<: *barmanObjectStore
serverName: *previousCluster
# - name: old-cluster
# connectionParameters:
# # Use the correct IP or host name for the source database
# host: postgresql.database.svc
# user: postgres
# dbname: postgres
# #sslmode: require
# password:
# name: cloudnative-pg-secret
# key: password

8
kubernetes/main/apps/database/postgresql/cluster/kustomization.yaml Normal file
View File

@ -0,0 +1,8 @@
---
# yaml-language-server: $schema=https://json.schemastore.org/kustomization
apiVersion: kustomize.config.k8s.io/v1beta1
kind: Kustomization
resources:
- ./cluster16.yaml
- ./scheduledbackup.yaml
- ./prometheusrule.yaml

76
kubernetes/main/apps/database/postgresql/cluster/prometheusrule.yaml Normal file
View File

@ -0,0 +1,76 @@
---
# yaml-language-server: $schema=https://kubernetes-schemas.pages.dev/monitoring.coreos.com/prometheusrule_v1.json
apiVersion: monitoring.coreos.com/v1
kind: PrometheusRule
metadata:
name: cloudnative-pg-rules
labels:
prometheus: k8s
role: alert-rules
spec:
groups:
- name: cloudnative-pg.rules
rules:
- alert: LongRunningTransaction
annotations:
description: Pod {{ $labels.pod }} is taking more than 5 minutes (300 seconds) for a query.
summary: A query is taking longer than 5 minutes.
expr: |-
cnpg_backends_max_tx_duration_seconds > 300
for: 1m
labels:
severity: warning
- alert: BackendsWaiting
annotations:
description: Pod {{ $labels.pod }} has been waiting for longer than 5 minutes
summary: If a backend is waiting for longer than 5 minutes
expr: |-
cnpg_backends_waiting_total > 300
for: 1m
labels:
severity: warning
- alert: PGDatabase
annotations:
description: Over 300,000,000 transactions from frozen xid on pod {{ $labels.pod }}
summary: Number of transactions from the frozen XID to the current one
expr: |-
cnpg_pg_database_xid_age > 300000000
for: 1m
labels:
severity: warning
- alert: PGReplication
annotations:
description: Standby is lagging behind by over 300 seconds (5 minutes)
summary: The standby is lagging behind the primary
expr: |-
cnpg_pg_replication_lag > 300
for: 1m
labels:
severity: warning
- alert: LastFailedArchiveTime
annotations:
description: Archiving failed for {{ $labels.pod }}
summary: Checks the last time archiving failed. Will be < 0 when it has not failed.
expr: |-
(cnpg_pg_stat_archiver_last_failed_time - cnpg_pg_stat_archiver_last_archived_time) > 1
for: 1m
labels:
severity: warning
- alert: DatabaseDeadlockConflicts
annotations:
description: There are over 10 deadlock conflicts in {{ $labels.pod }}
summary: Checks the number of database conflicts
expr: |-
cnpg_pg_stat_database_deadlocks > 10
for: 1m
labels:
severity: warning
- alert: ReplicaFailingReplication
annotations:
description: Replica {{ $labels.pod }} is failing to replicate
summary: Checks if the replica is failing to replicate
expr: |-
cnpg_pg_replication_in_recovery > cnpg_pg_replication_is_wal_receiver_up
for: 1m
labels:
severity: warning

12
kubernetes/main/apps/database/postgresql/cluster/scheduledbackup.yaml Normal file
View File

@ -0,0 +1,12 @@
---
# yaml-language-server: $schema=https://kubernetes-schemas.pages.dev/postgresql.cnpg.io/scheduledbackup_v1.json
apiVersion: postgresql.cnpg.io/v1
kind: ScheduledBackup
metadata:
name: postgres
spec:
schedule: "@daily"
immediate: true
backupOwnerReference: self
cluster:
name: postgres16

49
kubernetes/main/apps/database/postgresql/helm-release.yaml
View File

@ -1,49 +0,0 @@
apiVersion: helm.toolkit.fluxcd.io/v2
kind: HelmRelease
metadata:
name: postgresql
namespace: database
spec:
interval: 5m
chart:
spec:
chart: postgresql
version: 14.3.x
sourceRef:
kind: HelmRepository
name: bitnami-charts
namespace: flux-system
values:
auth:
existingSecret: "pgsql-secrets"
secretKeys:
adminPasswordKey: "adminPassword"
replicationPasswordKey: "replicationPassword"
tls:
enabled: true
certificatesSecret: postgres-cert
certFilename: "tls.crt"
certKeyFilename: "tls.key"
serviceMonitor:
enabled: true
labels:
release: kube-prometheus-stack
volumePermissions:
enabled: true
primary:
persistence:
existingClaim: "postgresql-pv-claim"
containerSecurityContext:
enabled: true
runAsUser: 10000
readReplicas:
containerSecurityContext:
enabled: true
runAsUser: 10000

56
kubernetes/main/apps/database/postgresql/ks.yaml Normal file
View File

@ -0,0 +1,56 @@
# yaml-language-server: $schema=https://kubernetes-schemas.pages.dev/kustomize.toolkit.fluxcd.io/kustomization_v1.json
apiVersion: kustomize.toolkit.fluxcd.io/v1
kind: Kustomization
metadata:
name: cloudnative-pg
namespace: flux-system
spec:
timeout: 5m
interval: 10m
path: ./kubernetes/main/apps/database/postgresql/app
prune: true
sourceRef:
kind: GitRepository
name: home-cluster
decryption:
provider: sops
secretRef:
name: sops-gpg
dependsOn:
- name: openebs
- name: openebs-sc
postBuild:
substituteFrom:
- kind: ConfigMap
name: cluster-settings
- kind: Secret
name: cluster-secrets
---
# yaml-language-server: $schema=https://kubernetes-schemas.pages.dev/kustomize.toolkit.fluxcd.io/kustomization_v1.json
apiVersion: kustomize.toolkit.fluxcd.io/v1
kind: Kustomization
metadata:
name: cloudnative-pg-cluster
namespace: flux-system
spec:
timeout: 5m
interval: 10m
path: ./kubernetes/main/apps/database/postgresql/cluster
prune: true
sourceRef:
kind: GitRepository
name: home-cluster
decryption:
provider: sops
secretRef:
name: sops-gpg
dependsOn:
- name: openebs
- name: openebs-sc
- name: cloudnative-pg
postBuild:
substituteFrom:
- kind: ConfigMap
name: cluster-settings
- kind: Secret
name: cluster-secrets

8
kubernetes/main/apps/database/postgresql/kustomization.yaml
View File

@ -1,8 +0,0 @@
apiVersion: kustomize.config.k8s.io/v1beta1
kind: Kustomization
resources:
- ./pgsql-pv.yaml
- ./pgsql.sops.yaml
- ./cert.yaml
- ./helm-release.yaml
#- ./pgadmin4

47
kubernetes/main/apps/database/postgresql/pgadmin4/helm-release.yaml
View File

@ -1,47 +0,0 @@
apiVersion: helm.toolkit.fluxcd.io/v2
kind: HelmRelease
metadata:
name: pgadmin4
namespace: database
spec:
interval: 5m
chart:
spec:
chart: pgadmin4
version: "1.29.0"
sourceRef:
kind: HelmRepository
name: runix-charts
namespace: flux-system
values:
ingress:
enabled: true
annotations:
cert-manager.io/cluster-issuer: letsencrypt-production
traefik.ingress.kubernetes.io/router.entrypoints: websecure
hosts:
- host: &host pgadm.${SECRET_NEW_DOMAIN}
paths:
- path: "/"
pathType: Prefix
tls:
- hosts:
- *host
# securityContext:
# runAsUser: 10000
# runAsGroup: 10000
# fsGroup: 10000
#
# containerSecurityContext:
# enabled: true
# allowPrivilegeEscalation: false
# envVarsFromConfigMaps:
# - pgadmin4-secret
persistentVolume:
enabled: false
volumePermissions:
enabled: true

27
kubernetes/main/apps/database/postgresql/pgsql-pv.yaml
View File

@ -1,27 +0,0 @@
apiVersion: v1
kind: PersistentVolume
metadata:
name: postgresql-pv
namespace: database
spec:
storageClassName: hostpath
persistentVolumeReclaimPolicy: Retain
capacity:
storage: 12Gi
accessModes:
- ReadWriteOnce
hostPath:
path: "/mnt/MainPool/Kubernetes/databases/postgresql"
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
name: postgresql-pv-claim
namespace: database
spec:
storageClassName: hostpath
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 10Gi

62
kubernetes/main/apps/database/postgresql/pgsql.sops.yaml
View File

@ -1,62 +0,0 @@
apiVersion: v1
kind: Secret
metadata:
name: pgsql-secrets
namespace: database
stringData:
adminPassword: ENC[AES256_GCM,data:gJ7rl2V/VlbIIRvRHcwMaZKN87t5n8bVWZCj/tRv8Uw=,iv:b/5eEnOrHzJrtnO+E2IGwJLHy2AdJQwv9WfUR5fUHY4=,tag:nTtaDNHVfYpChQX9UWwdKA==,type:str]
userPassword: ENC[AES256_GCM,data:gR7q508lUaRDRJ/z5lH99JLJSS9zWfg0O+TAm2B9uvo=,iv:9DDQxwd/BGtLQDacAH/crfT+qU4Pn5sGkWuEtmMprUI=,tag:tK3WoUd7729LQDVqU7pckQ==,type:str]
replicationPassword: ENC[AES256_GCM,data:BSA5IfYhhvN445yp2i3BI5zlIXgdj+LejCPzvlTMnVo=,iv:Qku2NAQPLxt+NUnk2dSx1+WAoyx3aEuA3+piU2mubYk=,tag:MnI+atK6VLZUc3eGS1OE1w==,type:str]
sops:
kms: []
gcp_kms: []
azure_kv: []
hc_vault: []
age: []
lastmodified: "2023-10-22T16:25:15Z"
mac: ENC[AES256_GCM,data:uWVPfKwPpR212js7f2RnCzEsMnxk2JpGPcf2L5i4gJCddJCrRJkdhjWGyVVpp/ociP3JLRTI95+WSEUH0KkPZpY1ptQevCVsUemRytOCtBlR0yR4qsBwEisSu8m4B5dbAYsqlXAndrBNL2WGB7uBv+ILgNxkhlN58unseSWJBDM=,iv:e7QyZSlhpyQ+A8OmV4p1848itIUxyam6CJOI9/N7DDY=,tag:N28mfrAjUTTYkly1hu0OhA==,type:str]
pgp:
- created_at: "2023-06-19T18:35:15Z"
enc: |
-----BEGIN PGP MESSAGE-----
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14
kubernetes/main/apps/monitoring/kube-prometheus-stack/helm-release.yaml
View File

@ -59,12 +59,22 @@ spec:
prometheusSpec:
enableAdminAPI: false
retention: 1d
remoteWrite:
- url: http://victoria-metrics-server.monitoring.svc:8428/api/v1/write
# select everything
podMonitorSelectorNilUsesHelmValues: false
podMonitorSelector: {}
serviceMonitorSelectorNilUsesHelmValues: false
serviceMonitorSelector: {}
ruleSelectorNilUsesHelmValues: false
ruleSelector: {}
probeSelectorNilUsesHelmValues: false
probeSelector: {}
scrapeConfigSelectorNilUsesHelmValues: false
scrapeConfigSelector: {}
storageSpec:
volumeClaimTemplate:
spec: